rs36759131 SNP Detail

Summary

• ID
  rs36759131
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  126
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:11349393 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CTTTGTTGCT CTGCCTTCCC AGAAACTGGA TCCTTCAGTG
  AATATACACA GCCTTTCCCC TTAGTAGATA GTACAGCATT TCCCACTCTG GATATGGAGT
  Y
  TCAACAGAAA AAAAAAAATA GCCATCTTTT CCCCCCAGTA CCTGAATAGT CAGTCATGGT
  GCCCTGTCTA CTTGGGAAAT GGTACCATTG TTGATTCAAG                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss50596004	NES13637768	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs36759131					SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50596004	NES13637768	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:11349393 () rs orientation: forward

Symbol	Name	Function Class
Ms4ac	membrane-spanning 4-domains, subfamily A cluster	within coordinates
Rr544325	regulatory region 544325	576 bp distal
Tssr155162	transcription start site region 155162	502 bp upstream
Tssr155163	transcription start site region 155163	512 bp upstream
Tssr155164	transcription start site region 155164	534 bp upstream
Tssr155165	transcription start site region 155165	628 bp upstream
Tssr155166	transcription start site region 155166	666 bp upstream
Tssr158339	transcription start site region 158339	213 bp downstream
Tssr158340	transcription start site region 158340	320 bp downstream
Tssr158341	transcription start site region 158341	347 bp downstream
Tssr158342	transcription start site region 158342	896 bp downstream