rs3675978 SNP Detail

Summary

• ID
  rs3675978
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  107
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:77543042 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AATGA GATCTGACGC CCTCTTCTGG
  Y
  GTGTCTAAAG ACAGCTACAG TGTAC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C3H/HeJ	C57BL/6J	DBA/2J
ss5051975	WI_WGS_9_78340243	WI	MOUSE	f	SNP		C	T
ss46322482	mCV25224203	ABI	CRAMUS_MOUSE	f	SNP	C		T	C
ss136659834	ENSMUSSNP5931873	ENSEMBL	ENSEMBL_Sanger	f	SNP	C			C
SNP Consensus Information
SNP					Consensus Type	A/J	C3H/HeJ	C57BL/6J	DBA/2J
rs3675978					SNP	C	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:77543042 () rs orientation: forward

Symbol	Name	Function Class
Gm68532	predicted gene, 68532	within coordinates
Klhl31	kelch-like 31	972 bp upstream
Rr683389	regulatory region 683389	250 bp proximal
Rr683390	regulatory region 683390	751 bp proximal
Rr683391	regulatory region 683391	1057 bp proximal
Rr683392	regulatory region 683392	1654 bp proximal
Tssr86194	transcription start site region 86194	709 bp upstream
Tssr86195	transcription start site region 86195	734 bp upstream
Tssr86196	transcription start site region 86196	776 bp upstream
Tssr86197	transcription start site region 86197	815 bp upstream
Tssr86198	transcription start site region 86198	859 bp upstream
Tssr86199	transcription start site region 86199	861 bp upstream
Tssr86200	transcription start site region 86200	876 bp upstream
Tssr86201	transcription start site region 86201	953 bp upstream