rs36759875 SNP Detail

Summary

• ID
  rs36759875
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:45825288 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAACTAGCC AGTACAGTTA
  CGTATTCCAT ACCCTCACAT AGAATAAATG AATATTATAA AGACACCAAC TTTCCAAGAA
  CAGAGGAATA AAGGGAGTAT TTGCTTCTAC AGCAAAAGAA GGCAAAATGC TTCTAACTTT
  ACCTTTAAGC AACAAACATA AAAGTGTTCT CAAATCTAGT TTATATAATC TGCTTCATTT
  Y
  GAAAAGAGTA CTTTGTTATA GTCTGTCAGG TCTGTATTTA ACTGAGACAG GAGAGGCTAG
  CTTTTAATTT TCCTGTCTTT TTATATTTTT GTTGTTTTCA TTTCAAAGAG TCTGCATGTT
  AAAAAAATCA ACAAGAGGTA TAAGACATAC AAACTTTACA TACACTAATT ATATTGCTAT
  TTTCTTTTAT ATTTCATGTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51715847	NES14748592	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	T	C	T	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36759875					SNP	C	C	C	C	C	C	T	C	C	C	T	C	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51715847	NES14748592	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:45825288 () rs orientation: forward

Symbol	Name	Function Class
1600023N17Rik	RIKEN cDNA 1600023N17 gene	756 bp downstream
Cpgi15841	CpG island 15841	1299 bp proximal
Ncapg	non-SMC condensin I complex, subunit G	1973 bp upstream
Rr367838	regulatory region 367838	1636 bp upstream
Rr611093	regulatory region 611093	400 bp proximal
Rr611094	regulatory region 611094	544 bp proximal
Rr611095	regulatory region 611095	949 bp proximal
Rr611096	regulatory region 611096	1483 bp proximal
Rr611097	regulatory region 611097	1724 bp proximal
Tssr46141	transcription start site region 46141	1938 bp upstream
Tssr46142	transcription start site region 46142	1961 bp upstream