rs36762100 SNP Detail

Summary

• ID
  rs36762100
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:110229612 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGTAGAGTT TATGCTCCAA
  CTGTGGGTGT TAAAAGCTAC CGGGGGTGGG GGACCCGCAA AACGTTCGCA CAGCAGCTCT
  GGGAAACCCT CAGCTAGCAG CCCAAGTCTT CACTGGGCCC TGACGTCCAT AAGCGGGGCT
  GTAGCGCCCC CTGCTGGCCA CCATGCGTGC TCCCCCAAAG AGCGGTAGAG TAGTACGTGC
  R
  GTTTAATAAG TTCTTCTACG TGGGAGTCAG CACATAGTCT TAATGAAAGA GGAAAGAAAG
  GGGGGGAAAA AGCAGTTTGC AGATGCCAAC TGGGCTCCCC TCCCTTCGTC TTCTCCCCCC
  TTCCCCGACC TGCACGCGGG CTTGCTGTGC AGGGGCAGTG ACTCAGCGCC CACACGCTGC
  GCGGCGAGCA GCTGCTGGCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50455953	NES14118602	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	A	A	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36762100					SNP	G	G	G	G	G	G	G	G	G	G	A	A	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50455953	NES14118602	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:110229612 () rs orientation: forward

Symbol	Name	Function Class
Adm	adrenomedullin	585 bp downstream
Cpgi19577	CpG island 19577	1133 bp distal
Cpgi19578	CpG island 19578	within coordinates
Gm28863	predicted gene 28863	within coordinates
Gm72687	predicted gene, 72687	183 bp upstream
Rr400547	regulatory region 400547	within coordinates
Rr653271	regulatory region 653271	194 bp distal
Rr653272	regulatory region 653272	within coordinates
Rr653273	regulatory region 653273	39 bp distal
Rr653274	regulatory region 653274	1308 bp proximal
Tssr68501	transcription start site region 68501	1860 bp downstream
Tssr68502	transcription start site region 68502	874 bp downstream