rs3676330 SNP Detail

Summary

• ID
  rs3676330
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  107
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:128045917 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCCAG GGTCAGACAA GTCCAAACTG
  W
  ATATTCCGCA TACATATTCA ACTGT                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/10J	C57BLKS/J	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	DDK/Pas	FVB/NJ	I/LnJ	JF1/Ms	KK/HlJ	LG/J	LP/J	MA/MyJ	MAI/Pas	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZW/LacJ	PERA/EiJ	PL/J	PWD/Ph	PWD/PhJ	RIIIS/J	SEA/GnJ	SEG/Pas	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss5052334	WI_WGS_10_128874377	WI	MOUSE	f	SNP		T								A
ss6391543	AA408693_399	TWGNF	TWGNF-Mouse	r	SNP	A			A		A			A	T						A					T																									A
ss16379261	10.131.487	TWGNF	TWGNF-Mouse-2	r	SNP		A	A	A	A	A	A	T	A	T	T	T	T	T	A	A	A	A	A	T	T	T	A	T	A	T	A	A	T	A	A	A	T	A	A	A	A	A	A		T	T	A	A	A	A	A	A	A	A
ss38633251	mCV24907347	ABI	CRAMUS_MOUSE	f	SNP			T	T						A											A
ss50948659	NES14143291	PERLEGEN	MM_PANEL2	f	SNP		T		T	T	T	A		T							T					A		T			A					T		A			T				T									T
ss147738215	ENSMUSSNP6336163	ENSEMBL	ENSEMBL_Sanger	f	SNP			T	T																	A
ss323532319	CHEV_10_127647104	CHEVERUD	SCREENING_POP	f	SNP																											T																		T
SNP Consensus Information
SNP					Consensus Type	129/Sv	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/10J	C57BLKS/J	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	DDK/Pas	FVB/NJ	I/LnJ	JF1/Ms	KK/HlJ	LG/J	LP/J	MA/MyJ	MAI/Pas	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZW/LacJ	PERA/EiJ	PL/J	PWD/Ph	PWD/PhJ	RIIIS/J	SEA/GnJ	SEG/Pas	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs3676330					SNP	T	T	T	T	T	T	?	A	T	A	A	A	A	A	T	T	T	T	T	A	A	A	T	A	T	A	T	T	A	T	T	T	A	T	T	T	T	T	T	T	A	A	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss6391543	AA408693_399	TWGNF	TWGNF-Mouse-2	r	SNP	A/T
ss50948659	NES14143291	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:128045917 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2387	CpG island 2387	1570 bp proximal
Gls2	glutaminase 2 (liver, mitochondrial)	44 bp downstream
Rr224447	regulatory region 224447	483 bp proximal
Rr402345	regulatory region 402345	1662 bp upstream
Spryd4	SPRY domain containing 4	within coordinates
Tssr99849	transcription start site region 99849	1718 bp downstream
Tssr99850	transcription start site region 99850	1740 bp downstream