rs36763474 SNP Detail

Summary

• ID
  rs36763474
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:121315928 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAAAAACTCC ACCTCGGCCG
  CATCCATGTT GAAGAGTAGG CGGCCCAGGC CCGTTACCGC CCCTCCGCGA CTCAGAGGCA
  GCGCCTCAGG CACTTCTTTC CCGCCACCGC GCGGGGCCCG CCCCTCGAAC GGAAGACGTC
  CTGCGGCGGC CCTATAGAGA CGTTGCTCTC TTCGCAGCCT CCAAGTCACA GCTAGTACAA
  R
  CTCGCGGATT GGTCTGTAGG CGGAGCTGTA CGCCGGCCCC GCCCCTCTAA GGCCTACCGA
  TGCCCTTTCC AGTACTTGGG CTCCACGCTT CCTGAATCCT GATCCAGCGA GTTACAGCCC
  TGACGGCCCC GCCCTACTAC GTCACTACCC TCTCTAGGCC CCGCCTCTGG CCCGTCCGCT
  TTTTTTCATT GGTCTCCGGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	WSB/EiJ
ss51983398	NES14995666	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	WSB/EiJ
rs36763474					SNP	A	A	A	A	A	A	G	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51983398	NES14995666	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:121315928 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21156	CpG island 21156	within coordinates
Gins2	GINS complex subunit 2	114 bp upstream
Gm10614	predicted gene 10614	311 bp upstream
Rr401181	regulatory region 401181	within coordinates
Rr671590	regulatory region 671590	105 bp proximal
Rr671591	regulatory region 671591	327 bp proximal
Rr671592	regulatory region 671592	337 bp proximal
Tssr83202	transcription start site region 83202	139 bp upstream
Tssr83203	transcription start site region 83203	121 bp upstream
Tssr83204	transcription start site region 83204	109 bp upstream
Tssr83205	transcription start site region 83205	99 bp upstream