rs36765380 SNP Detail

Summary

• ID
  rs36765380
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:122834519 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATCAC CTGCATGCAA GACTGAACAA
  W
  GCTGTTAGCA GCAAGCCTCT TGCAT                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss51196193	NES13816102	PERLEGEN	MM_PANEL2	f	SNP	A	A	T	A	T	T	T	T	T		T	A	A	T		A
ss149189798	ENSMUSSNP877131	ENSEMBL	ENSEMBL_Sanger	f	SNP		A
ss321669481	CHEV_5_123146465	CHEVERUD	SCREENING_POP	f	SNP										A					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs36765380					SNP	A	A	T	A	T	T	T	T	T	A	T	A	A	T	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51196193	NES13816102	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:122834519 () rs orientation: forward

Symbol	Name	Function Class
Gm10064	predicted gene 10064	746 bp downstream
Gm71244	predicted gene, 71244	1008 bp upstream
Rr378567	regulatory region 378567	1677 bp upstream
Rr619947	regulatory region 619947	605 bp distal
Rr619948	regulatory region 619948	1646 bp proximal