rs36765930 SNP Detail

Summary

• ID
  rs36765930
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:130131413 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCTTAAGCT ATGTCCTTGA
  TTATTGTGAT TTCTTAGATG AGCATATTTC ATAGTAATGA GTACAATGAA CTCCTAGAAA
  CCAGACATTG AAGCGGGTGG GGGTGGGGGA ATGGCAGCTC TAGACACACA TACCTGGTGT
  TGTACACAGT CTGGTGGTGC TGAGACCTCA AGCCGTATGG TTCCATTTTT ATAGTCATCT
  Y
  TGGGCTAGGA ATAAGAAATT TAAATGACAG AATGACAGCT TATGGTATAA GATTGGCGGA
  GGAGGGTCTG TAGTATTTTT TGGTGATGGT TGCATGCCCC ATTAATTGAT TTGAAGACAC
  CATATCATAC CCTAATTGAG TTGGATTGTG TGTATACACT CAACCAAGCC GTTTTGACAG
  AAAAAGAAAG GATTGCTAGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50471193	NES14117767	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36765930					SNP	C	C	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50471193	NES14117767	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:130131413 () rs orientation: forward

Symbol	Name	Function Class
Gm4275	predicted gene 4275	182 bp downstream
Gm57247	predicted gene, 57247	1628 bp upstream
Gm72045	predicted gene, 72045	180 bp downstream
Rr153982	regulatory region 153982	388 bp proximal
Rr153983	regulatory region 153983	988 bp proximal
Rr153984	regulatory region 153984	1588 bp proximal
Rr160093	regulatory region 160093	1613 bp distal
Rr381489	regulatory region 381489	612 bp upstream
Tssr69470	transcription start site region 69470	1625 bp upstream