rs3676604 SNP Detail

Summary

• ID
  rs3676604
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  107
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:45016814 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCATGCACAG ATACATACAT
  GCACACACAC AAAGGCAGCT GTACACATAC ATACACACAA ACACAGGTAT TTTATAAGGT
  AAAATAGGAT CCCTTTTGGC CATTGGCTTT ATTTATTTTG AACTTTACTA TTAGCTTCTC
  ACAATCTAAC TGCCATGCAG GCTGCAGGCT ACATTTCAGT AGATAGGATG GAGTCTGAGT
  Y
  TTCTTCAACT CAGGAGACTC AGAGAAGAAA AGCACCCAGA AAGGCCCCCT GCTGTGCAGT
  GTGTAGGGGT AGGGACAAAG GAAGTGGCTC ACAGTGGCAC CATGTTAATT TGTAGACTAA
  CCAGTGATCC CCACCCTGTG ATGGAGCCAT GCTCTGTTGA GTTCAGGAAG GCTGGCCTCC
  CAAGCATGTG GAATGATGGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss5052610	WI_WGS_9_45360448	WI	MOUSE	f	SNP	T							C
ss46404655	mCV24046753	ABI	CRAMUS_MOUSE	f	SNP		T	C					C		C
ss61388961	NES16766731	PERLEGEN	MM_PANEL2	f	SNP			C	C	C	T	C		T	C	C	T	C	T	C
ss136405354	ENSMUSSNP229398	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C							C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs3676604					SNP	T	T	C	C	C	T	C	C	T	C	C	T	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61388961	NES16766731	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:45016814 () rs orientation: forward

Symbol	Name	Function Class
Gm10684	predicted gene 10684	1660 bp downstream
Jaml	junction adhesion molecule like	within coordinates
Rr677840	regulatory region 677840	1573 bp distal
Rr677841	regulatory region 677841	203 bp proximal
Tssr84726	transcription start site region 84726	1654 bp downstream
Tssr84727	transcription start site region 84727	1623 bp downstream
Tssr84728	transcription start site region 84728	1596 bp downstream