rs3676621 SNP Detail

Summary

• ID
  rs3676621
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  107
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:132354356 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTCCCTCAA CAACTGTTTT
  CCTTATGAAG AGGCACTAGA TTTATGTACC CCATACTTTT TCTGTGTCTA TTGGGATGGC
  CATGTGTTTT TTAAACATTT ATCTCATTAA GATGTGCCTT ATTAATTTTC TGCATCGGTC
  TTGTTTTTGA GGTAGCCTGT CCCTGAGTCT AGCCCTTCAC ATCTTGATGC CTTAGGTTCC
  W
  AGGGTGAACC TCAAGTGTTA AGAGGATCTT AATCTTGTGC TGCTGCAAGA TCCCTCTGCT
  ATCTCTTTGT TGAAGAGTTT TGAATCTGTA TTAGTAAGAT GCGTTGGCCT GTGGTTTCCT
  GTTTGCGTCT TTATCTTTTG ACACCAGGCT GAGCAGCAGC TGCGCCCTGG GCTTAAAGGC
  TCATCTTCTC TCCGTGTGTG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J
ss5052627	WI_WGS_2_133515812	WI	MOUSE	f	SNP	T			A
ss45285627	mCV25354071	ABI	CRAMUS_MOUSE	f	SNP		T	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J
rs3676621					SNP	T	T	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:132354356 () rs orientation: forward

Symbol	Name	Function Class
1700026D11Rik	RIKEN cDNA 1700026D11 gene	within coordinates
Gm10757	predicted gene 10757	1691 bp upstream
Gm74612	predicted gene, 74612	within coordinates
Rr367319	regulatory region 367319	2 bp upstream
Rr367320	regulatory region 367320	1568 bp upstream
Tssr26474	transcription start site region 26474	53 bp downstream
Tssr26475	transcription start site region 26475	1466 bp downstream