rs3676623 SNP Detail

Summary

• ID
  rs3676623
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  107
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:132354358 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCCTCAACA ACTGTTTTCC
  TTATGAAGAG GCACTAGATT TATGTACCCC ATACTTTTTC TGTGTCTATT GGGATGGCCA
  TGTGTTTTTT AAACATTTAT CTCATTAAGA TGTGCCTTAT TAATTTTCTG CATCGGTCTT
  GTTTTTGAGG TAGCCTGTCC CTGAGTCTAG CCCTTCACAT CTTGATGCCT TAGGTTCCAA
  R
  GGTGAACCTC AAGTGTTAAG AGGATCTTAA TCTTGTGCTG CTGCAAGATC CCTCTGCTAT
  CTCTTTGTTG AAGAGTTTTG AATCTGTATT AGTAAGATGC GTTGGCCTGT GGTTTCCTGT
  TTGCGTCTTT ATCTTTTGAC ACCAGGCTGA GCAGCAGCTG CGCCCTGGGC TTAAAGGCTC
  ATCTTCTCTC CGTGTGTGTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J
ss5052629	WI_WGS_2_133515814	WI	MOUSE	f	SNP	A			G
ss45199527	mCV25354081	ABI	CRAMUS_MOUSE	f	SNP		A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J
rs3676623					SNP	A	A	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:132354358 () rs orientation: forward

Symbol	Name	Function Class
1700026D11Rik	RIKEN cDNA 1700026D11 gene	within coordinates
Gm10757	predicted gene 10757	1693 bp upstream
Gm74612	predicted gene, 74612	within coordinates
Rr367319	regulatory region 367319	within coordinates
Rr367320	regulatory region 367320	1566 bp upstream
Rr565480	regulatory region 565480	within coordinates
Rr565481	regulatory region 565481	56 bp proximal
Rr565482	regulatory region 565482	649 bp proximal
Tssr26474	transcription start site region 26474	51 bp downstream
Tssr26475	transcription start site region 26475	1464 bp downstream