rs36766620 SNP Detail

Summary

• ID
  rs36766620
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:101205648 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCTCTCTCC CTCTCTCCCT
  CTCTCCCTCC CTCCCTCCCT CCCTCCCTCC CTCCCCCCCT CCCTCCCTCC CTTCCTTCCT
  TCCTTCCTTT CCTTCCTCCT TCCCTTCCTT TGATAGGATC TTGCTGTGTA CATTAGGAGG
  GTCGTGAACT TGTGACTTCA CTCCCCCATT TCCTGGGTTA GGAATATAAG CATGGCACAC
  Y
  TGGCCTGACT AAATTTAGGA TAATCTATTT ATTTTGGAAA TGTATTAGCT TATAAAGAAT
  TGGGTTTTTA TTATGGTTTT GTCAAAATAT TTTAATTTTT TCCTCTACCA ACAGTTCCCC
  CACTCTCTTT CTTTTGTGTT TTCCCATCCC ATTCCCAGTA TCCTTTCTAT TTCACACCAC
  ATGTGACCTT TACCCAGCCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss50784751	NES14209224	PERLEGEN	MM_PANEL2	f	SNP	C	T	T	T	T	T		C	C	C		T
ss323149605	CHEV_9_101230779	CHEVERUD	SCREENING_POP	f	SNP							C				T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs36766620					SNP	C	T	T	T	T	T	C	C	C	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50784751	NES14209224	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:101205648 () rs orientation: forward

Symbol	Name	Function Class
Rr198413	regulatory region 198413	within coordinates
Rr206996	regulatory region 206996	1049 bp distal