rs3676701 SNP Detail

Summary

• ID
  rs3676701
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  107
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:45016860 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATACATACAC ACAAACACAG
  GTATTTTATA AGGTAAAATA GGATCCCTTT TGGCCATTGG CTTTATTTAT TTTGAACTTT
  ACTATTAGCT TCTCACAATC TAACTGCCAT GCAGGCTGCA GGCTACATTT CAGTAGATAG
  GATGGAGTCT GAGTCTTCTT CAACTCAGGA GACTCAGAGA AGAAAAGCAC CCAGAAAGGC
  Y
  CCCTGCTGTG CAGTGTGTAG GGGTAGGGAC AAAGGAAGTG GCTCACAGTG GCACCATGTT
  AATTTGTAGA CTAACCAGTG ATCCCCACCC TGTGATGGAG CCATGCTCTG TTGAGTTCAG
  GAAGGCTGGC CTCCCAAGCA TGTGGAATGA TGGGCTTGTG TTTGCTCCTG TCATACTGCA
  CAGAAGACAA GTGATTCCCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss5052707	WI_WGS_9_45360494	WI	MOUSE	f	SNP	T			C
ss46308032	mCV24046754	ABI	CRAMUS_MOUSE	f	SNP		T	C	C	C
ss136405357	ENSMUSSNP1333164	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C		C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs3676701					SNP	T	T	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:45016860 () rs orientation: forward

Symbol	Name	Function Class
Gm10684	predicted gene 10684	1614 bp downstream
Jaml	junction adhesion molecule like	within coordinates
Rr677840	regulatory region 677840	1619 bp distal
Rr677841	regulatory region 677841	157 bp proximal
Tssr84726	transcription start site region 84726	1700 bp downstream
Tssr84727	transcription start site region 84727	1669 bp downstream
Tssr84728	transcription start site region 84728	1642 bp downstream