rs36767655 SNP Detail

Summary

• ID
  rs36767655
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:86411430 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TACCACCACT GGCCAGAAGC
  CCACCCTGTA CCCCGCAGGT GACCCAGTTT CCAGGAAGCC TTTCTCACAG GCAGTCTTTG
  TCACACACTT CACTTCTCCA ATGTCTCTTA TTTCTGCTGG CTCTAATCTG CTCTCCCCAA
  CCCCATTCCC AAATCCATGT GGGCACAAGA ATCACATGTG GGTCACATGA CTTCCGTAGG
  M
  CATTCTGTGG GGGCCTTATG CAAGTAGTTG TGTGCAGAGA CTCACCAGCT CAGCAGCAGC
  CACAGACACA GCTTTCCAGC TTTCCCGTTT TTTTCAGGCT CATAGCTCCT CTTACAGGCC
  TGACTTCAAA AGAAATTGGC TTGCTGGAGA AGAAATAGTA CTCTCTCCTG TGATTCATAA
  TCTCTCTCTC TCTCTCTCTC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50559684	NES13670040	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	C		A	C	A
ss147658559	ENSMUSSNP6475993	ENSEMBL	ENSEMBL_Sanger	f	SNP								A				C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36767655					SNP	A	A	A	A	A	A	A	A	A	A	C	C	A	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50559684	NES13670040	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:86411430 () rs orientation: forward

Symbol	Name	Function Class
Cpgi10352	CpG island 10352	746 bp proximal
Cpgi10353	CpG island 10353	1496 bp proximal
Gm54041	predicted gene, 54041	within coordinates
Neto1	neuropilin (NRP) and tolloid (TLL)-like 1	1647 bp upstream
Rr542239	regulatory region 542239	within coordinates
Rr542240	regulatory region 542240	473 bp proximal
Rr542241	regulatory region 542241	1157 bp proximal
Rr542242	regulatory region 542242	1737 bp proximal
Tg(Ddx4-cre)1Dcas	transgene insertion 1, Diego H Castrillon	within coordinates
Tssr152242	transcription start site region 152242	1467 bp upstream
Tssr152243	transcription start site region 152243	1488 bp upstream
Tssr152244	transcription start site region 152244	1505 bp upstream
Tssr152245	transcription start site region 152245	1613 bp upstream
Tssr152246	transcription start site region 152246	1647 bp upstream
Tssr152247	transcription start site region 152247	1697 bp upstream
Tssr152248	transcription start site region 152248	1879 bp upstream
Tssr152249	transcription start site region 152249	1970 bp upstream