rs36768140 SNP Detail

Summary

• ID
  rs36768140
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:8930612 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TACTGTGCGG CTGATAATCA
  CAGCACAAGC TGCTGAGCTC TCACCTGGTA GCCCTTCCAT TTCATCACGG GCCCTATGAT
  CGACCAGCTT TCATACTCTC CTCTGCTTCT GAAACCACAC GACTAATTCT GGTTGGGGAT
  CTGCTACACT TCCCGTTCCA CATTCTTGAA TGAATGTCCT TATCTCTTAC CACTGTAGTC
  R
  GTTCTTCATT GTACTGCCTT GAAACGGGCC TCGTTAATAT ACTTCATTCA GACTACATCT
  GTGGAAGAAA CTGGCAGACT AAGCTATCAG CCATCTGGCA TTGCGCTCAT TGAATCCAGC
  TGATGGGGGT GGGAGAGACA GGGATGGACA GCTCTGAGAA CACTTGTAGA AGGATCAGGC
  TGCAGAGAAA GGAACTGACC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50609128	NES13644054	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	G	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36768140					SNP	A	A	A	A	A	A	A	A	A	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50609128	NES13644054	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:8930612 () rs orientation: forward

Symbol	Name	Function Class
Cpgi10588	CpG island 10588	212 bp proximal
Gm59132	predicted gene, 59132	within coordinates
Mta2	metastasis-associated gene family, member 2	953 bp downstream
Rr359578	regulatory region 359578	1612 bp distal
Rr363780	regulatory region 363780	within coordinates
Rr405849	regulatory region 405849	318 bp upstream
Tssr154900	transcription start site region 154900	1163 bp downstream
Tssr154901	transcription start site region 154901	578 bp upstream
Tssr154902	transcription start site region 154902	613 bp upstream
Tssr154903	transcription start site region 154903	638 bp upstream
Tssr154904	transcription start site region 154904	729 bp upstream
Tut1	terminal uridylyl transferase 1, U6 snRNA-specific	599 bp upstream