rs36768880 SNP Detail

Summary

• ID
  rs36768880
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:42175447 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCCGG GCACCCGGGG ATCCTCGCGA
  Y
  CGCCCGCGGG TCCTCCCACT CGCGG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
ss52006402	NES15025815	PERLEGEN	MM_PANEL2	f	SNP	C		T	T	T	T	T	C	C	C
ss136379349	ENSMUSSNP5073194	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T			T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
rs36768880					SNP	C	T	T	T	T	T	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52006402	NES15025815	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:42175447 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21617	CpG island 21617	within coordinates
Gm10690	predicted gene 10690	207 bp upstream
Rr368719	regulatory region 368719	352 bp upstream
Rr401326	regulatory region 401326	42 bp upstream
Rr677189	regulatory region 677189	within coordinates
Rr677190	regulatory region 677190	39 bp proximal
Rr677191	regulatory region 677191	319 bp proximal
Sc5d	sterol-C5-desaturase	within coordinates
Tssr84545	transcription start site region 84545	320 bp upstream
Tssr89018	transcription start site region 89018	53 bp downstream
Tssr89019	transcription start site region 89019	75 bp downstream