rs36770495 SNP Detail

Summary

• ID
  rs36770495
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  126
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:51106522 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GATTTATCCA GGCGTAATTC TAAGGGGACA GGGGGGAAAA
  GGGAAAGCAA AAGCTTAGAG AGAAGCCTGG CATGGCATAG CGGTGACCTG TCTAGAATCA
  Y
  AGCTGAAAAG GAGACCATAA GAACATGGAG GCCAGCCTGG GCTACATAGC AAATTCCAGG
  TCCACGTGAG CACTGACACT CTCTTTCTCA AAAGAAAATG                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51512150	NES14632195	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36770495					SNP	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51512150	NES14632195	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:51106522 () rs orientation: forward

Symbol	Name	Function Class
Cpgi6408	CpG island 6408	1212 bp proximal
Gm26782	predicted gene, 26782	1187 bp upstream
Rr404075	regulatory region 404075	1449 bp upstream
Rr491714	regulatory region 491714	914 bp proximal
Rr491715	regulatory region 491715	1309 bp proximal
Rr491716	regulatory region 491716	1485 bp proximal
Tep1	telomerase associated protein 1	within coordinates
Tssr125373	transcription start site region 125373	1290 bp upstream
Tssr128379	transcription start site region 128379	285 bp downstream
Tssr128380	transcription start site region 128380	1434 bp downstream
Tssr128381	transcription start site region 128381	1492 bp downstream