rs3677169 SNP Detail

Summary

• ID
  rs3677169
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  107
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:45016879 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTATTTTAT AAGGTAAAAT
  AGGATCCCTT TTGGCCATTG GCTTTATTTA TTTTGAACTT TACTATTAGC TTCTCACAAT
  CTAACTGCCA TGCAGGCTGC AGGCTACATT TCAGTAGATA GGATGGAGTC TGAGTCTTCT
  TCAACTCAGG AGACTCAGAG AAGAAAAGCA CCCAGAAAGG CCCCCTGCTG TGCAGTGTGT
  R
  GGGGTAGGGA CAAAGGAAGT GGCTCACAGT GGCACCATGT TAATTTGTAG ACTAACCAGT
  GATCCCCACC CTGTGATGGA GCCATGCTCT GTTGAGTTCA GGAAGGCTGG CCTCCCAAGC
  ATGTGGAATG ATGGGCTTGT GTTTGCTCCT GTCATACTGC ACAGAAGACA AGTGATTCCC
  AGCTGATGAC AGTGGAGAGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss5053177	WI_WGS_9_45360513	WI	MOUSE	f	SNP	G			A
ss46344387	mCV24046761	ABI	CRAMUS_MOUSE	f	SNP		G	A	A	A
ss136405360	ENSMUSSNP1475451	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	A		A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs3677169					SNP	G	G	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:45016879 () rs orientation: forward

Symbol	Name	Function Class
Gm10684	predicted gene 10684	1595 bp downstream
Jaml	junction adhesion molecule like	within coordinates
Rr677840	regulatory region 677840	1638 bp distal
Rr677841	regulatory region 677841	138 bp proximal
Tssr84726	transcription start site region 84726	1719 bp downstream
Tssr84727	transcription start site region 84727	1688 bp downstream
Tssr84728	transcription start site region 84728	1661 bp downstream