rs3677172 SNP Detail

Summary

• ID
  rs3677172
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  107
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:45016883 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTTATAAGG TAAAATAGGA
  TCCCTTTTGG CCATTGGCTT TATTTATTTT GAACTTTACT ATTAGCTTCT CACAATCTAA
  CTGCCATGCA GGCTGCAGGC TACATTTCAG TAGATAGGAT GGAGTCTGAG TCTTCTTCAA
  CTCAGGAGAC TCAGAGAAGA AAAGCACCCA GAAAGGCCCC CTGCTGTGCA GTGTGTAGGG
  K
  TAGGGACAAA GGAAGTGGCT CACAGTGGCA CCATGTTAAT TTGTAGACTA ACCAGTGATC
  CCCACCCTGT GATGGAGCCA TGCTCTGTTG AGTTCAGGAA GGCTGGCCTC CCAAGCATGT
  GGAATGATGG GCTTGTGTTT GCTCCTGTCA TACTGCACAG AAGACAAGTG ATTCCCAGCT
  GATGACAGTG GAGAGAGTTC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss5053180	WI_WGS_9_45360517	WI	MOUSE	f	SNP	T			G
ss46353098	mCV24046762	ABI	CRAMUS_MOUSE	f	SNP		T	G	G	G
ss136405363	ENSMUSSNP599709	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	G		G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs3677172					SNP	T	T	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:45016883 () rs orientation: forward

Symbol	Name	Function Class
Gm10684	predicted gene 10684	1591 bp downstream
Jaml	junction adhesion molecule like	within coordinates
Rr677840	regulatory region 677840	1642 bp distal
Rr677841	regulatory region 677841	134 bp proximal
Tssr84726	transcription start site region 84726	1723 bp downstream
Tssr84727	transcription start site region 84727	1692 bp downstream
Tssr84728	transcription start site region 84728	1665 bp downstream