rs36771937 SNP Detail

Summary

• ID
  rs36771937
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr14:75425578 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CATGG GACTGTGGTG AGAATGTAGA
  R
  AAAGCACTCA GCAGATAGTA ACTGC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	BALB/cByJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NZW/LacJ	SM/J
ss51533023	NES14628108	PERLEGEN	MM_PANEL2	f	SNP	A	A	G	A	A		A
ss324673332	CHEV_14_75587945	CHEVERUD	SCREENING_POP	f	SNP						A		G
SNP Consensus Information
SNP					Consensus Type	A/J	BALB/cByJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NZW/LacJ	SM/J
rs36771937					SNP	A	A	G	A	A	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51533023	NES14628108	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:75425578 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Lcp1	lymphocyte cytosolic protein 1			Intron
				Noncoding-Transcript-Variant
Rr495439	regulatory region 495439			1429 bp distal
Tssr126634	transcription start site region 126634			844 bp downstream