rs3677286 SNP Detail

Summary

• ID
  rs3677286
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  107
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:132354482 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTCTGCATC GGTCTTGTTT
  TTGAGGTAGC CTGTCCCTGA GTCTAGCCCT TCACATCTTG ATGCCTTAGG TTCCAAGGGT
  GAACCTCAAG TGTTAAGAGG ATCTTAATCT TGTGCTGCTG CAAGATCCCT CTGCTATCTC
  TTTGTTGAAG AGTTTTGAAT CTGTATTAGT AAGATGCGTT GGCCTGTGGT TTCCTGTTTG
  M
  GTCTTTATCT TTTGACACCA GGCTGAGCAG CAGCTGCGCC CTGGGCTTAA AGGCTCATCT
  TCTCTCCGTG TGTGTGTGGG GGGGGGGGGG GGCGGGGGGG CCCAGTCTTC AGAGTCAGGA
  AGTCCCTCTC ACGTGGTCGA GTTCCAGAGA CCAAGCTCCT GTCGCTTTAG ATCCTGAGTG
  TTGTGGAGGG GCTCCACGGA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	C57BL/6J
ss5053295	WI_WGS_2_133515938	WI	MOUSE	f	SNP	A	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	C57BL/6J
rs3677286					SNP	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:132354482 () rs orientation: forward

Symbol	Name	Function Class
1700026D11Rik	RIKEN cDNA 1700026D11 gene	within coordinates
Gm10757	predicted gene 10757	1817 bp upstream
Gm74612	predicted gene, 74612	58 bp upstream
Rr367319	regulatory region 367319	within coordinates
Rr367320	regulatory region 367320	1442 bp upstream
Tssr26474	transcription start site region 26474	53 bp upstream
Tssr26475	transcription start site region 26475	1340 bp downstream