rs36776200 SNP Detail

Summary

• ID
  rs36776200
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:123129253 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTCAA ATAGGATGCT GGAGATTTTC
  R
  TTCATCTTCC TCCCTGAAGT CTCTC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
ss51195105	NES13813328	PERLEGEN	MM_PANEL2	f	SNP		A	G	A	G	G	G	G	G	G		G	G	G		A
ss149192242	ENSMUSSNP3842814	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A						G
ss321670144	CHEV_5_123441199	CHEVERUD	SCREENING_POP	f	SNP											A				G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
rs36776200					SNP	A	A	G	A	G	G	G	G	G	G	A	G	G	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51195105	NES13813328	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:123129253 () rs orientation: forward

Symbol	Name	Function Class
A930024E05Rik	RIKEN cDNA A930024E05 gene	within coordinates
Cpgi16566	CpG island 16566	1657 bp distal
Gm44574	predicted gene 44574	within coordinates
Gm73435	predicted gene, 73435	within coordinates
Kdm2b	lysine (K)-specific demethylase 2B	1920 bp upstream
Rr620033	regulatory region 620033	1895 bp distal
Rr620034	regulatory region 620034	1394 bp distal
Rr620035	regulatory region 620035	1249 bp distal
Rr620036	regulatory region 620036	374 bp distal
Rr620037	regulatory region 620037	within coordinates
Tssr48730	transcription start site region 48730	1938 bp downstream
Tssr48731	transcription start site region 48731	1909 bp downstream
Tssr48732	transcription start site region 48732	1875 bp downstream
Tssr48733	transcription start site region 48733	1824 bp downstream
Tssr48734	transcription start site region 48734	1578 bp downstream
Tssr48735	transcription start site region 48735	1451 bp downstream
Tssr48736	transcription start site region 48736	1428 bp downstream
Tssr48737	transcription start site region 48737	1247 bp downstream
Tssr48738	transcription start site region 48738	421 bp downstream
Tssr48739	transcription start site region 48739	410 bp downstream
Tssr48740	transcription start site region 48740	365 bp downstream
Tssr48741	transcription start site region 48741	326 bp downstream
Tssr53173	transcription start site region 53173	1910 bp upstream
Tssr53174	transcription start site region 53174	1852 bp upstream
Tssr53175	transcription start site region 53175	900 bp upstream
Tssr53176	transcription start site region 53176	783 bp upstream
Tssr53177	transcription start site region 53177	727 bp upstream
Tssr53178	transcription start site region 53178	695 bp upstream
Tssr53179	transcription start site region 53179	661 bp upstream
Tssr53180	transcription start site region 53180	617 bp upstream