rs36777314 SNP Detail

Summary

• ID
  rs36777314
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:69622962 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTTAGGCCC TTCTTCCAGG
  GGGGTCTCAA CTACAGGGCT TTGCTCACCA AAAGGCCTAC ATGTGCCCAA CACTGAACTC
  CTCCAAAGCA GGGCTTCTCC CAGGCTCCTG TGTGGGAAGC AGTTGGCACT GAGGGTGCCC
  TTTAGTTAAT TAAGTCCTGC AGTAGAGCTC AGTGCTGGCC TCACTCCACA ACTGGGAGTT
  Y
  TAATTTCCCG CTTCATTCTG TTACAAATTC CGTCCCTCCC CAAGGTCAGG TTCCCAGAGG
  CAGTGATTGT GGAAGGACAG GTTCAGGAGT GGGTCTAGCT AGCAGGGAGG AGGGGAGGCA
  AGCAGGGTGT GGTCCCCAGG AAACTGGTAC TAAGCTGCTC TGTGGGTTAA GCCAGCTGGA
  CTTCATATGA AAGGAAGTCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51017735	NES14400669	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	C	C	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36777314					SNP	T	T	T	T	C	C	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51017735	NES14400669	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:69622962 () rs orientation: forward

Symbol	Name	Function Class
Rr257074	regulatory region 257074	1162 bp distal
Rr403327	regulatory region 403327	1343 bp downstream
Vcpkmt	valosin containing protein lysine (K) methyltransferase	1440 bp downstream