rs36777387 SNP Detail

Summary

• ID
  rs36777387
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr16:43482552 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATGGC CAGAAGCTGG TCCTGCTGCT
  Y
  CCAGTCGACT TGGGTCACTT CAGCT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss51819007	NES14536958	PERLEGEN	MM_PANEL2	f	SNP	T	T	C	T	T	T	C	T	T	T		C	T	T	C		T
ss325162100	CHEV_16_43662302	CHEVERUD	SCREENING_POP	f	SNP											C					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs36777387					SNP	T	T	C	T	T	T	C	T	T	T	C	C	T	T	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51819007	NES14536958	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:43482552 () rs orientation: forward

Symbol	Name	Function Class
Rr404824	regulatory region 404824	397 bp downstream
Rr516192	regulatory region 516192	1947 bp proximal
Tigit	T cell immunoreceptor with Ig and ITIM domains	Coding-NonSynonymous
Tssr141140	transcription start site region 141140	1010 bp downstream
Tssr141141	transcription start site region 141141	1915 bp downstream
Tssr141142	transcription start site region 141142	1943 bp downstream
Tssr141143	transcription start site region 141143	1956 bp downstream