rs36777552 SNP Detail

Summary

• ID
  rs36777552
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:56683806 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTTCACGTG TTTTTTTTTT
  TTTTTCTTAT TTTTAAAAAG ATTATACTAG ATCTGGTACT TCCCAAGCTC ACAGTTGGAG
  AAATACGAAG ATCCGGAAAC ATGCGAATTT GTATATAATG GAACAACTGC TCACCAGTGG
  TTATTTGGTG AGGTAAATCT TTTTTTTTCT TTAAATATTT TCAGTGATCA ATAGTGGCAC
  Y
  GATAAGCACA CAGGTCACAA ATGATATTTT GCAATAATTA GACAGAAGTA GATTTCGTTA
  ATGGTTATCT TGAACTCCTA ACATCCCTAA GAATAGGAAC CCTGCTGGTT CATTAGAGAA
  GCATACAGAA CTAAGGGTCT GGACTGTGGT TTACGATAGT CTGCTGTCAG GAACATTCTG
  AGACTGGACA ACCCATCAAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51962101	NES14976992	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36777552					SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51962101	NES14976992	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:56683806 () rs orientation: forward

Symbol	Name	Function Class
Rr663625	regulatory region 663625	1278 bp proximal
Rr663626	regulatory region 663626	1777 bp proximal
Tssr81315	transcription start site region 81315	1609 bp upstream