rs36778881 SNP Detail

Summary

• ID
  rs36778881
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:80598482 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGCTCCCGT GTGGTTTCTG
  AGCTGCGGTG TGTGTCTGGG TCGCTATGAA CTAATTTCAA GTCTGTGGAG TCCAAAAGCC
  ACAGGGCTGC CGAAAAAAAC AGAACTCATT CTCAGCAGGG CCCCAGAGTT TACATAAAAC
  AGGCGAGGAA GGCTGGAGAC CTGGGTCTGG CGAAAACAAA ACAAAAGCTT GCGATGCTCA
  M
  GTCCAGGCTG AGCCTCACCC TGGAGAAGAG GCCAAGGGCG CCTGCGCAGG TTTGCTCAGC
  AAATAAAACC CTGGCTGCAC TTGGGGAGTC CTGGAGCGCA GCCGTGCCCT CCCCCCTCCC
  CACGCCTGCT TTCCTCTCGC ACCTCTTTGG AAGGCTGTCT GAATGGCTTA GCTGCATCCT
  ATATGCAGTG GGGCTCAGTG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss50521912	NES13678047	PERLEGEN	MM_PANEL2	f	SNP	C	C	A	C	C	C	C	A	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs36778881					SNP	C	C	A	C	C	C	C	A	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50521912	NES13678047	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:80598482 () rs orientation: forward

Symbol	Name	Function Class
Cpgi10304	CpG island 10304	160 bp distal
Gm54039	predicted gene, 54039	406 bp upstream
Rr541547	regulatory region 541547	within coordinates
Tssr152111	transcription start site region 152111	74 bp downstream
Tssr152112	transcription start site region 152112	34 bp downstream
Tssr154031	transcription start site region 154031	470 bp upstream