rs3677921 SNP Detail

Summary

• ID
  rs3677921
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  107
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr9:45017050 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCAGAAAGGC CCCCTGCTGT
  GCAGTGTGTA GGGGTAGGGA CAAAGGAAGT GGCTCACAGT GGCACCATGT TAATTTGTAG
  ACTAACCAGT GATCCCCACC CTGTGATGGA GCCATGCTCT GTTGAGTTCA GGAAGGCTGG
  CCTCCCAAGC ATGTGGAATG ATGGGCTTGT GTTTGCTCCT GTCATACTGC ACAGAAGACA
  M
  GTGATTCCCA GCTGATGACA GTGGAGAGAG TTCTGCCAAG GCACTGTGAG AAGAGAGGTC
  TGGCCCTGTT CCACTAAGTA AAACATTAGC CCTTCTGAAG TCACCGATGA ATAGATTCAT
  TTTCTTCAAC ATCCCTCTCC CATATTGCCA TGTGATACTT CAGCAACAGG CCAGATCTCA
  TCCTGGCTTT TAGAGACTAG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss5053932	WI_WGS_9_45360684	WI	MOUSE	f	SNP	C							A
ss46330122	mCV24046763	ABI	CRAMUS_MOUSE	f	SNP		C	A					A		A
ss61388960	NES16766732	PERLEGEN	MM_PANEL2	f	SNP			A	A	A	C	A		C	A	A	C	A	C	C	A
ss136405366	ENSMUSSNP3544415	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	A							A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs3677921					SNP	C	C	A	A	A	C	A	A	C	A	A	C	A	C	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61388960	NES16766732	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:45017050 () rs orientation: forward

Symbol	Name	Function Class
Gm10684	predicted gene 10684	1424 bp downstream
Jaml	junction adhesion molecule like	Intron
Rr677840	regulatory region 677840	1809 bp distal
Rr677841	regulatory region 677841	within coordinates
Tssr84726	transcription start site region 84726	1890 bp downstream
Tssr84727	transcription start site region 84727	1859 bp downstream
Tssr84728	transcription start site region 84728	1832 bp downstream