rs36779880 SNP Detail

Summary

• ID
  rs36779880
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:60658453 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGAATAAAAT CCCTCCAACC
  TTAGAAAAAG AGTGTGATTT AATAAATTTT AGATTTAATC TATTAACATT TAACTATTTA
  TAATATACAT TAAATGCTGT ATAACTGAAA AACATTTTAT AAAGTAAGCT ATTGCCTTCT
  TAGAAAATGT GCTGAAGGTA TTCCATATGG GGGCAATGTG TGCCAGCCCT GGAATAAACA
  Y
  AAGAAAAAAC AGGAAGCAAA TCGCCGTGCT TCCCTAAGCC CAGGTTTCCT GCTCTCTAAA
  ATAGAAATAA TGCTAGTATC TACCTTTGAG GTTTCATGAG AATTGAAGCA GTGGTATGCT
  TTACATTTCG TCTACTTCCA CTGTCAATGT TTATAGAAAG GTTCTCTTTC TGCTTCCATC
  ATGGGCTCTA ATGTCAGACA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50418822	NES13463085	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36779880					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50418822	NES13463085	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:60658453 () rs orientation: forward

Symbol	Name	Function Class
Cpgi10090	CpG island 10090	522 bp proximal
Dctn4	dynactin 4	804 bp upstream
Gm58902	predicted gene, 58902	within coordinates
Rr346411	regulatory region 346411	1853 bp distal
Rr352957	regulatory region 352957	within coordinates
Tssr151313	transcription start site region 151313	813 bp upstream
Tssr153448	transcription start site region 153448	595 bp downstream
Tssr153449	transcription start site region 153449	662 bp downstream
Tssr153450	transcription start site region 153450	705 bp downstream