rs36780236 SNP Detail

Summary

• ID
  rs36780236
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:140842068 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGGGACACA TTGTGACACA
  GAATAGCTAA ATCTGTATGT GTCAGCTGCC ATTTCTAGTT TGCATGGACT CCTGGGTCTG
  TAAGTATGGA GTCAGCCAGC TCTCACAAAG TGCCACTCAG GCAATGCTCA TTAAAACTAA
  AATAATAGAT GAGGAATTTC AGATGTCCTC AATCCACCCA ATTTCTTTGG ATCTTTGGAG
  R
  AACTAAGTCT CTGAGAGATG GGCAGATTTT TCTATAGGAA CAAGTTTTAG CTTCCTTCTG
  ACCTCTGACA CAGGAAGATA AACCTCAGCA GCTCTGTGAA GTGTGGTTAC AGATGTGTGT
  GTAGGGTGGG CATACAAGTC CCCTTAACAA GATCAAGGGC ACTACTTGAG ATGGTCAGGA
  CAAGGAAGCT TGGTTGAGTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51935596	NES14951783	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	A	G	A	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36780236					SNP	G	G	G	G	G	G	G	G	G	G	A	G	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51935596	NES14951783	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:140842068 () rs orientation: forward

Symbol	Name	Function Class
Irf7	interferon regulatory factor 7	1028 bp downstream
Phrf1	PHD and ring finger domains 1	within coordinates
Tssr69941	transcription start site region 69941	1028 bp upstream
Tssr75604	transcription start site region 75604	1370 bp downstream
Tssr75605	transcription start site region 75605	1528 bp downstream
Tssr75606	transcription start site region 75606	1666 bp downstream
Tssr75607	transcription start site region 75607	1742 bp downstream
Tssr75608	transcription start site region 75608	1799 bp downstream
Tssr75609	transcription start site region 75609	1817 bp downstream
Tssr75610	transcription start site region 75610	1842 bp downstream