rs36780240 SNP Detail

Summary

• ID
  rs36780240
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:71658822 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGTCAGTGG CCTGCCCAAA
  AAATATAAAA AAATATAAAA ACCAGGACTC AAAGGGTTAT TCAACAAATC AGGGGCTAAT
  GTAAGTACCT ATCTTGCTAA TAGCTTCAAA ATTACATGAG AAGGGAATCT ACAAAAGACA
  AAAACAAAGA TATCTTTATA CGGTAGCCCT GCAATTATCA CACTGAAGAC ACAAAGCCTA
  W
  AAGAAATGAT TTAAACTGTC AATAACTTCT AGCATAGAAG GAGAAAATAG GAGAAAGCAA
  ATACCTCTGT AAAAATTTAT ACGTGTGTAT TTTAGTATAA TATATGCAAT TTAACCTCAC
  AAAGACAATG CAATTCCTTT TAAGAGTATG AAAACAAATA CAAGGAAACT AGCAGTTAGA
  AGTAAGTAGT CTGCTGGTCT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51151418	NES13836587	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T		T	T	T	T	T	T	A	T
ss61177175	NES16684228	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	A	T	T	T	T	T	T	A	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36780240					SNP	T	T	T	T	T	T	A	T	T	T	T	T	T	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51151418	NES13836587	PERLEGEN	MM_PANEL	f	SNP	A/T
ss61177175	NES16684228	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:71658822 () rs orientation: forward

Symbol	Name	Function Class
Cox7b2	cytochrome c oxidase subunit 7B2	within coordinates
Tssr51282	transcription start site region 51282	1177 bp downstream