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rs36780499 SNP Detail
Summary
  • ID
    rs36780499
  • Variation Type
    SNP
  • Alleles
    A/G
Genome Location and Flanking Sequence
  • Location
    Chr19:5848966 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                AACAGCTCTA CAGGTCTTTT
TGGAAAAAGA GAAAAAAGGC ACTTATCTAT CCCTAACATG CAATACTGCA GATCCAAGTT
ACACTTATCT GTCAACAGCA GTCTGCTGTT TCCTGCTCCG AGATGGAATG AAGCAACTCT
TCTGCTTATG AAGAGAAACC TGTCTGAGGC AAACGAAACA TTGGCACACT GCACCGCCTC
R
CAGCCGCTCG ATCCCACTCA TCTCAACAAG CTCAGCTTCT TTTTACTCCA GGCTTAATGC
AGCATTTTCA CTTCATTTCT ATTCTGCTTT TGTAAAAGCA GTTTTGAGAT GAACATTTGA
TCTTCACTGT TTTTCATCAA TTCTTTACTT TTGTGGATAA AGCTTGGTAG ATAAGCCATA
ACTTTTAAAG GTATTGCCAT                                            

R = A/G

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
DBA/2J
FVB/NJ
KK/HlJ
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
WSB/EiJ
ss50577488 NES13649165 PERLEGEN MM_PANEL2 f SNP G G G G G G G G G A G G A G
SNP Consensus Information
SNP Consensus Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
DBA/2J
FVB/NJ
KK/HlJ
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
WSB/EiJ
rs36780499 SNP G G G G G G G G G A G G A G
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation
Type		 Alleles
ss50577488 NES13649165 PERLEGEN MM_PANEL f SNP A/G
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr19:5848966 () rs orientation: forward
Symbol Name Transcript Protein Function
Class		 Allele Residue Codon
Position		 AA
Position
Gm55521 predicted gene, 55521 62 bp downstream
Malat1 metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA) within coordinates
Rr543161 regulatory region 543161 573 bp distal
Rr543162 regulatory region 543162 within coordinates
Rr543163 regulatory region 543163 480 bp proximal
Tssr5416 transcription start site region 5416 1623 bp upstream
Tssr5417 transcription start site region 5417 88 bp downstream
Tssr5418 transcription start site region 5418 571 bp downstream
Tssr5419 transcription start site region 5419 1225 bp downstream
Tssr5420 transcription start site region 5420 1242 bp downstream
Tssr157651 transcription start site region 157651 1974 bp upstream
Tssr157652 transcription start site region 157652 1834 bp upstream
Tssr157653 transcription start site region 157653 1750 bp upstream
Tssr157654 transcription start site region 157654 1696 bp upstream
Tssr157655 transcription start site region 157655 1670 bp upstream
Tssr157656 transcription start site region 157656 1637 bp upstream
Tssr157657 transcription start site region 157657 1517 bp upstream
Tssr157658 transcription start site region 157658 1411 bp upstream
Tssr157659 transcription start site region 157659 1307 bp upstream
Tssr157660 transcription start site region 157660 1211 bp upstream
Tssr157661 transcription start site region 157661 1178 bp upstream
Tssr157662 transcription start site region 157662 1085 bp upstream
Tssr157663 transcription start site region 157663 1024 bp upstream
Tssr157664 transcription start site region 157664 910 bp upstream
Tssr157665 transcription start site region 157665 901 bp upstream
Tssr157666 transcription start site region 157666 869 bp upstream
Tssr157667 transcription start site region 157667 615 bp upstream
Tssr157668 transcription start site region 157668 574 bp upstream
Tssr157669 transcription start site region 157669 555 bp upstream
Tssr157670 transcription start site region 157670 539 bp upstream
Tssr157671 transcription start site region 157671 518 bp upstream
Tssr157672 transcription start site region 157672 468 bp upstream
Tssr157673 transcription start site region 157673 434 bp upstream
Tssr157674 transcription start site region 157674 422 bp upstream
Tssr157675 transcription start site region 157675 409 bp upstream
Tssr157676 transcription start site region 157676 394 bp upstream
Tssr157677 transcription start site region 157677 372 bp upstream
Tssr157678 transcription start site region 157678 358 bp upstream
Tssr157679 transcription start site region 157679 290 bp upstream
Tssr157680 transcription start site region 157680 263 bp upstream
Tssr157681 transcription start site region 157681 242 bp upstream
Tssr157682 transcription start site region 157682 229 bp upstream
Tssr157683 transcription start site region 157683 193 bp upstream
Tssr157684 transcription start site region 157684 183 bp upstream
Tssr157685 transcription start site region 157685 168 bp upstream
Tssr157686 transcription start site region 157686 107 bp upstream
Tssr157687 transcription start site region 157687 86 bp upstream
Tssr157688 transcription start site region 157688 39 bp upstream
Tssr157689 transcription start site region 157689 2 bp upstream
Tssr157690 transcription start site region 157690 65 bp downstream
Tssr157691 transcription start site region 157691 111 bp downstream
Tssr157692 transcription start site region 157692 165 bp downstream
Tssr157693 transcription start site region 157693 222 bp downstream
Tssr157694 transcription start site region 157694 280 bp downstream
Tssr157695 transcription start site region 157695 344 bp downstream
Tssr157696 transcription start site region 157696 365 bp downstream
Tssr157697 transcription start site region 157697 414 bp downstream
Tssr157698 transcription start site region 157698 430 bp downstream
Tssr157699 transcription start site region 157699 488 bp downstream
Tssr157700 transcription start site region 157700 537 bp downstream
Tssr157701 transcription start site region 157701 555 bp downstream
Tssr157702 transcription start site region 157702 591 bp downstream
Tssr157703 transcription start site region 157703 642 bp downstream
Tssr157704 transcription start site region 157704 668 bp downstream
Tssr157705 transcription start site region 157705 689 bp downstream
Tssr157706 transcription start site region 157706 737 bp downstream
Tssr157707 transcription start site region 157707 783 bp downstream
Tssr157708 transcription start site region 157708 793 bp downstream
Tssr157709 transcription start site region 157709 805 bp downstream
Tssr157710 transcription start site region 157710 824 bp downstream
Tssr157711 transcription start site region 157711 843 bp downstream
Tssr157712 transcription start site region 157712 880 bp downstream
Tssr157713 transcription start site region 157713 907 bp downstream
Tssr157714 transcription start site region 157714 958 bp downstream
Tssr157715 transcription start site region 157715 975 bp downstream
Tssr157716 transcription start site region 157716 1019 bp downstream
Tssr157717 transcription start site region 157717 1046 bp downstream
Tssr157718 transcription start site region 157718 1091 bp downstream
Tssr157719 transcription start site region 157719 1145 bp downstream
Tssr157720 transcription start site region 157720 1164 bp downstream
Tssr157721 transcription start site region 157721 1200 bp downstream
Tssr157722 transcription start site region 157722 1217 bp downstream
Tssr157723 transcription start site region 157723 1292 bp downstream
Tssr157724 transcription start site region 157724 1301 bp downstream
Tssr157725 transcription start site region 157725 1347 bp downstream
Tssr157726 transcription start site region 157726 1352 bp downstream
Tssr157727 transcription start site region 157727 1367 bp downstream
Tssr157728 transcription start site region 157728 1464 bp downstream
Tssr157729 transcription start site region 157729 1663 bp downstream
Tssr157730 transcription start site region 157730 1793 bp downstream
Tssr157731 transcription start site region 157731 1816 bp downstream
Tssr157732 transcription start site region 157732 1859 bp downstream
Tssr157733 transcription start site region 157733 1896 bp downstream
Tssr157734 transcription start site region 157734 1913 bp downstream
Tssr157735 transcription start site region 157735 1937 bp downstream
Tssr157736 transcription start site region 157736 1975 bp downstream
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
12/17/2024
MGI 6.24 		The Jackson Laboratory