rs3678151 SNP Detail

Summary

• ID
  rs3678151
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  107
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:67729342 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATTCTGGAG TGGCCAAGTA
  AAGACTCTCA AACCCGTATA TCTTGGTCTG GATTCATTCT TATTTTCTGT CCTGAATGTC
  TGACTCAGAG GACCTCTCAC TGTGTTATCC TCCTGACATC CCATACTCTG AAAACCCAAC
  TGGACACACT GTCCACACTT CAAGGCAGTG CTTGTCACTG TCACACTATT ATTGTGAGTA
  R
  TCCTCACCTT TCAAACCTTG GACTTATCAT TGGCCCTTTA TAGGATGACA GTTGGTATTG
  TGTACCACTT ATATCCTGAA ACTTTGTCCA ATTTACTTAT TACTTTCTGT AGTTTTTTAA
  TGAATCATTG TTTGTTCTAT AGATTAAATT ATTGAATTAA CGAATTCTTT TCCTTCTGGC
  TTTGAACTCT GGAATCTTTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
ss5054162	WI_WGS_2_68664218	WI	MOUSE	f	SNP	A						G
ss38137867	NES09297197	PERLEGEN	MM_PANEL2	f	SNP	A	G	G	G	G	G		G	G	G	G	G	G	G
ss146722257	ENSMUSSNP2310280	ENSEMBL	ENSEMBL_Sanger	f	SNP									G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
rs3678151					SNP	A	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38137867	NES09297197	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:67729342 () rs orientation: forward

Symbol	Name	Function Class
B3galt1	UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 1	within coordinates
Gm37964	predicted gene, 37964	within coordinates
Rr558231	regulatory region 558231	305 bp distal