rs3678168 SNP Detail

Summary

• ID
  rs3678168
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  107
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:5663010 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTTAA CTACACTTGT AGATAGGAGA
  K
  CTAAGTATTT GCTCTCAGAG GAGAG                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	BALB/cByJ	C57BL/6J
ss5054179	WI_WGS_2_5640242	WI	MOUSE	f	SNP	T	G
SNP Consensus Information
SNP					Consensus Type	BALB/cByJ	C57BL/6J
rs3678168					SNP	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:5663010 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Camk1d	calcium/calmodulin-dependent protein kinase ID			Intron
				Noncoding-Transcript-Variant
Rr551239	regulatory region 551239			within coordinates
Tssr22412	transcription start site region 22412			792 bp upstream