rs36782171 SNP Detail

Summary

• ID
  rs36782171
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  126
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:72437140 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGAGGTATCC ACAGCCACTT TGTCAATTCT CTTGTTAGAC
  CACTGCAGTG GGTTACAAAT CACTCTCCAT GCTGTCTCTG ACTGTAAAAC CAGAGTTTTC
  Y
  TTCCCAGCTC AATTGGCATT CCTCAGACTG TTTTTTTCCC CATTGTCATA CACACCCTCG
  AGGGGAAGTT TACACTTTCC GTGACTGGGA TCTGCTCATA                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss50742070	NES14238979	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs36782171					SNP	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50742070	NES14238979	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:72437140 () rs orientation: forward

Symbol	Name	Function Class
4930509E16Rik	RIKEN cDNA 4930509E16 gene	within coordinates
Cpgi22017	CpG island 22017	1610 bp proximal
Rr401508	regulatory region 401508	499 bp upstream
Rr401509	regulatory region 401509	1761 bp upstream
Rr682766	regulatory region 682766	within coordinates
Rr682767	regulatory region 682767	542 bp proximal
Rr682768	regulatory region 682768	619 bp proximal
Rr682769	regulatory region 682769	1292 bp proximal
Rr682770	regulatory region 682770	1892 bp proximal
Tssr86008	transcription start site region 86008	1870 bp upstream