rs36782886 SNP Detail

Summary

• ID
  rs36782886
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:43449014 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAGCTTGAC ATTCATTAAG
  GAACTTTCCA TTCCTAGTCT CCTTTGATGA TGCTAAACCA GAGTCTACTA GGAAACTACT
  TATGTAGCAT CTATTCTCAA TGAAAGACGT GGCAGAGGGA AAGCGTGAGT GTGAGCTTCG
  TGGTAGTGAG GCTGGCCCTT TGGTGATCGC AGGCACGAGG TAGATGGTCC CAACTCCATT
  R
  TTCTTGCTTT CTCTTTCTTA CCAAAAATTT TCTCATTTCT TATTTCCTTT TAAAGACAAC
  TACGTGCTAC CCAATCATCT CTTCACTTCC CCACCCCTGA AAATCTTACA TTATGACCCC
  TAACTGTTCG TGAATTTCTC CTACCACTCT TCTTAGCATC TTTCTTTAAA CGAGTTCATA
  AACTTGAGAC TTGTAGGCAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51819361	NES14537460	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	A	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36782886					SNP	G	G	G	G	G	G	A	G	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51819361	NES14537460	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:43449014 () rs orientation: forward

Symbol	Name	Function Class
Tssr138522	transcription start site region 138522	1994 bp downstream
Tssr138523	transcription start site region 138523	1622 bp upstream
Tssr138524	transcription start site region 138524	1661 bp upstream
Tssr141139	transcription start site region 141139	202 bp downstream
Zbtb20	zinc finger and BTB domain containing 20	within coordinates