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rs36786104 SNP Detail
Summary
  • ID
    rs36786104
  • Variation Type
    SNP
  • Alleles
    A/G
Genome Location and Flanking Sequence
  • Location
    Chr19:44384949 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                TCTACCAAGC TTTCCTGAAA
TCACTGTGAC AGAGGCACAT GAGTTGGAGG TAGGGAGGAT CTGGAAGCCA CAGAAAGGTG
GCACCTGGCT CTGCTTCCTG AAGCTACACA GCTCTTCCAC ACCCACGGAT ACTGGGGGAG
GAACAGGCCT GGACAGCAGC AAGTCCTGGG TGCTCTTGAT ACACTCAGGC AACTAGCTGC
R
TGTCCGGAGA AAGAAAAAAA GGCCAAAGAA AGAAATGTCA GAAGAAATCA GGTGGGTAAG
AGCTTCCTAG GCAGCACTAG GCAGGCTGGG TGGCCACAAA GCAAAGAAGG CATGGAAGGT
TCAAAACCAT GGGAAGCCAA GTTTCTACAC AATCCAAGGA GGAAACTAAA GCAATGGATG
GAGCCAACAC CATGCGGATC                                            

R = A/G

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
CAST/EiJ
DBA/2J
FVB/NJ
KK/HlJ
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
WSB/EiJ
ss50801816 NES13525194 PERLEGEN MM_PANEL2 f SNP A A A A A A G A A A A A A G G
SNP Consensus Information
SNP Consensus Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
CAST/EiJ
DBA/2J
FVB/NJ
KK/HlJ
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
WSB/EiJ
rs36786104 SNP A A A A A A G A A A A A A G G
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation
Type		 Alleles
ss50801816 NES13525194 PERLEGEN MM_PANEL f SNP A/G
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr19:44384949 () rs orientation: forward
Symbol Name Transcript Protein Function
Class		 Allele Residue Codon
Position		 AA
Position
D19Mit67 DNA segment, Chr 19, Massachusetts Institute of Technology 67 645 bp proximal
D19Mit67.2 DNA segment, Chr 19, Massachusetts Institute of Technology 67.2 495 bp proximal
D19Nds1 DNA segment, Chr 19, Nuffield Department of Surgery 1 603 bp proximal
Rr548237 regulatory region 548237 1092 bp distal
Rr548238 regulatory region 548238 359 bp proximal
Scd1 stearoyl-Coenzyme A desaturase 1 within coordinates
Tssr5524 transcription start site region 5524 146 bp upstream
Tssr156606 transcription start site region 156606 84 bp downstream
Tssr156607 transcription start site region 156607 222 bp upstream
Tssr156608 transcription start site region 156608 631 bp upstream
Tssr156609 transcription start site region 156609 841 bp upstream
Tssr159446 transcription start site region 159446 1917 bp upstream
Tssr159447 transcription start site region 159447 1742 bp upstream
Tssr159448 transcription start site region 159448 1716 bp upstream
Tssr159449 transcription start site region 159449 1653 bp upstream
Tssr159450 transcription start site region 159450 1639 bp upstream
Tssr159451 transcription start site region 159451 1559 bp upstream
Tssr159452 transcription start site region 159452 1265 bp upstream
Tssr159453 transcription start site region 159453 1196 bp upstream
Tssr159454 transcription start site region 159454 1177 bp upstream
Tssr159455 transcription start site region 159455 871 bp upstream
Tssr159456 transcription start site region 159456 752 bp upstream
Tssr159457 transcription start site region 159457 723 bp upstream
Tssr159458 transcription start site region 159458 689 bp upstream
Tssr159459 transcription start site region 159459 597 bp upstream
Tssr159460 transcription start site region 159460 561 bp upstream
Tssr159461 transcription start site region 159461 500 bp upstream
Tssr159462 transcription start site region 159462 468 bp upstream
Tssr159463 transcription start site region 159463 429 bp upstream
Tssr159464 transcription start site region 159464 399 bp upstream
Tssr159465 transcription start site region 159465 379 bp upstream
Tssr159466 transcription start site region 159466 361 bp upstream
Tssr159467 transcription start site region 159467 297 bp upstream
Tssr159468 transcription start site region 159468 51 bp upstream
Tssr159469 transcription start site region 159469 1 bp downstream
Tssr159470 transcription start site region 159470 18 bp downstream
Tssr159471 transcription start site region 159471 35 bp downstream
Tssr159472 transcription start site region 159472 71 bp downstream
Tssr159473 transcription start site region 159473 90 bp downstream
Tssr159474 transcription start site region 159474 115 bp downstream
Tssr159475 transcription start site region 159475 160 bp downstream
Tssr159476 transcription start site region 159476 178 bp downstream
Tssr159477 transcription start site region 159477 198 bp downstream
Tssr159478 transcription start site region 159478 208 bp downstream
Tssr159479 transcription start site region 159479 232 bp downstream
Tssr159480 transcription start site region 159480 260 bp downstream
Tssr159481 transcription start site region 159481 309 bp downstream
Tssr159482 transcription start site region 159482 409 bp downstream
Tssr159483 transcription start site region 159483 500 bp downstream
Tssr159484 transcription start site region 159484 534 bp downstream
Tssr159485 transcription start site region 159485 660 bp downstream
Tssr159486 transcription start site region 159486 667 bp downstream
Tssr159487 transcription start site region 159487 748 bp downstream
Tssr159488 transcription start site region 159488 765 bp downstream
Tssr159489 transcription start site region 159489 819 bp downstream
Tssr159490 transcription start site region 159490 921 bp downstream
Tssr159491 transcription start site region 159491 956 bp downstream
Tssr159492 transcription start site region 159492 1007 bp downstream
Tssr159493 transcription start site region 159493 1033 bp downstream
Tssr159494 transcription start site region 159494 1053 bp downstream
Tssr159495 transcription start site region 159495 1171 bp downstream
Tssr159496 transcription start site region 159496 1241 bp downstream
Tssr159497 transcription start site region 159497 1254 bp downstream
Tssr159498 transcription start site region 159498 1266 bp downstream
Tssr159499 transcription start site region 159499 1296 bp downstream
Tssr159500 transcription start site region 159500 1327 bp downstream
Tssr159501 transcription start site region 159501 1342 bp downstream
Tssr159502 transcription start site region 159502 1378 bp downstream
Tssr159503 transcription start site region 159503 1391 bp downstream
Tssr159504 transcription start site region 159504 1470 bp downstream
Tssr159505 transcription start site region 159505 1583 bp downstream
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
12/17/2024
MGI 6.24 		The Jackson Laboratory