rs3678641 SNP Detail

Summary

• ID
  rs3678641
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  107
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:165438674 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTAAGTCCC CCAAGCCTAA
  TATTTCCCTG TCTTTAGACA TCCTCAGACT GGGGAAAGTT AATGGGCTAT TTATGTAAGA
  AATGATAATG TTTGGAATCT TGTTTGTGAC TGAGCATAAT AATGAGCTTG GATTTGAAAC
  TTGAAAATCT GCAGTTGTGA AAAAAAAAAA AAACCAACAA CAATGTATGA ATAGATCTGA
  R
  AGAACCTGAG ATGGTGCAAG TGTGTGTGGG AGTGTGTTTG TGTGTTTGTT TGTGTGAGTG
  TGTGTGTGTG TTTGTGTGTG TTAAACTACT TTTTAGGTTC CTATGCCCCT TTGTATCTTA
  GTTCACAACT CGATAAACTG TTTTATCTTC AAAGAATGTT ATTTTCTTCC TGTGTCTTGG
  AGCGCTTGTG TACTGCTGCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss5054654	WI_WGS_2_166564303	WI	MOUSE	f	SNP	A			G
ss45302153	mCV23743218	ABI	CRAMUS_MOUSE	f	SNP	A	A	G		G
ss148241340	ENSMUSSNP4951542	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	G		G
ss320608378	CHEV_2_165422254	CHEVERUD	SCREENING_POP	f	SNP						G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs3678641					SNP	A	A	G	G	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:165438674 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12713	CpG island 12713	919 bp distal
Eya2	EYA transcriptional coactivator and phosphatase 2	Intron
Rr569955	regulatory region 569955	1712 bp distal
Rr569956	regulatory region 569956	211 bp distal
Rr569957	regulatory region 569957	1519 bp distal
Rr569958	regulatory region 569958	1342 bp distal
Rr569959	regulatory region 569959	795 bp proximal
Tssr21727	transcription start site region 21727	1674 bp downstream
Tssr21728	transcription start site region 21728	582 bp downstream