rs36786673 SNP Detail

Summary

• ID
  rs36786673
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:96356428 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCATAGAAG GAAAAGAGGA
  CAAGCAGAAA CAAAGTTATC AAAGTAGAGT CAAGTTCTAA GGTTTTCTTT ACTTTTTTTT
  AAACAGTCGC AGAGCTTTTG AAGTAACTGC TTACATGTTA ACAAGAACAG TCTATAAGTA
  ACAATCTTAT TCATTTAGAT GGCTACTAGG TATAAATATA AAAATAAAGC TTCTGGAAAA
  K
  TCCAGCTTTG ATGAGGTCCA TCTTCTGTGA GTAGCTTCAG GAAGCCAAGT TTTGCAGGCT
  TGAAATTCTT ATCAAGTCAC TAATTCATAT AAGCATGGAT TCATTTTTTT TTTTTTTTCA
  ACGTTTACTG CAGACCTTCC TTCCGGTCTG ACGCTGTGTG TAGTATGTGC TGAGGTTACA
  AAAATGAACG ACATGATTGC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51771869	NES14721830	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	G	T	T	T	G	T	T	G	T
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36786673					SNP	T	T	T	T	T	G	T	T	T	G	T	T	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51771869	NES14721830	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:96356428 () rs orientation: forward

Symbol	Name	Function Class
Cpgi16074	CpG island 16074	1394 bp proximal
Gm72185	predicted gene, 72185	within coordinates
Mrpl1	mitochondrial ribosomal protein L1	929 bp upstream
Rr367885	regulatory region 367885	1382 bp upstream
Rr614891	regulatory region 614891	1399 bp distal
Rr614892	regulatory region 614892	within coordinates
Rr614893	regulatory region 614893	434 bp proximal
Rr614894	regulatory region 614894	935 bp proximal
Rr614895	regulatory region 614895	1473 bp proximal
Rr614896	regulatory region 614896	1586 bp proximal
Tssr47395	transcription start site region 47395	894 bp upstream
Tssr47396	transcription start site region 47396	1175 bp upstream
Tssr47397	transcription start site region 47397	1559 bp upstream
Tssr51962	transcription start site region 51962	1436 bp downstream