rs3678681 SNP Detail

Summary

• ID
  rs3678681
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  107
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:78754301 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGTATCTGC TAATATGGGT
  GGGTGTATTT TGTGTGCAGT CTCATATGCA TGTCAGCTTG TTCATGTGGA GGACAGAGAT
  TGAGTTTGGC CATCTTTTCT TGACTGCTGT CCACCTTTCT TTAGGAGACA TGGTCTTTAA
  GGGAAACTCA TTTGTTTAGC TCGGCTGAAT AGACAATAAA TTTCAGATAC TGGGCTGTAC
  Y
  ATGGCCCACT CTGATACTAG CGGTATAGTC TTGGGCATTG CCACAGCTGT TTTTACAAGG
  GTGCTGGGAA TCTGAACTTA GTTGTTCTTG TTTGCCAACT AGCACTTTAT CATCCACACA
  TCTCTATCCA ACTATCACTA TAACGGACAA GCTAGTCAGG ATTCTCAGTT ACGTGTACTG
  TCAGACACTG ATACAGAAAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	WSB/EiJ
ss5054695	WI_WGS_9_79611815	WI	MOUSE	f	SNP	C						T
ss61426022	NES16807122	PERLEGEN	MM_PANEL2	f	SNP	C	T	T	T	C	T		T	T	T	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	WSB/EiJ
rs3678681					SNP	C	T	T	T	C	T	T	T	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61426022	NES16807122	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:78754301 () rs orientation: forward

Symbol	Name	Function Class
Rr210878	regulatory region 210878	900 bp proximal