rs36787014 SNP Detail

Summary

• ID
  rs36787014
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:134807777 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTCTAGCAC GGGCCCTCGC
  CTTTGCAAAA ATTTCACACT CTGTTAACAG TGTTTGCTAA GGATTCCAAG GAGTGCAAGC
  CCCCCTCTCT GACGTGCTGG TCGAAATAAG TGAAGAAACT ACGGTGCTTT TTTTTTTTTT
  TTTCTTTTTT CCTTTTTTGC CCTGTTCTAG CCCCTCGCAG CGTTTTCCAT TTAGGAGAGG
  Y
  TAATTCGTGC GTCCCGAACT AGGCATAATC ACCCTTGATG GTTTTCCCTC CTTCCCTCCA
  TCAGCCTCGC TCACTCAATG CCCCGTTCAT CTCACCAGTT CACTCCCCCA ACCCTGAGCT
  ATTTTCCTGG GGCTGGTTGA AACAGTTCCT GTTGCTATCA GGCCAGAGCG CCTGTAATCT
  AACCTCTAGA AACCTTTTTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51438861	NES14009634	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36787014					SNP	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51438861	NES14009634	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:134807777 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18077	CpG island 18077	171 bp distal
Crebl2	cAMP responsive element binding protein-like 2	within coordinates
Gm67917	predicted gene, 67917	719 bp upstream
Rr368197	regulatory region 368197	550 bp downstream
Rr639728	regulatory region 639728	730 bp distal
Rr639729	regulatory region 639729	549 bp distal
Rr639730	regulatory region 639730	within coordinates
Rr639731	regulatory region 639731	332 bp distal
Tssr59250	transcription start site region 59250	635 bp downstream
Tssr59251	transcription start site region 59251	544 bp downstream
Tssr59252	transcription start site region 59252	477 bp downstream
Tssr59253	transcription start site region 59253	40 bp downstream
Tssr59254	transcription start site region 59254	218 bp upstream