rs36787607 SNP Detail

Summary

• ID
  rs36787607
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:122522121 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GTAAGTCAGC AGAATCGTGT AGAGGTAGTC TTAGCTTCAA
  AATTCACAGG CCAAGGACAG GTGGTTGTCA TTTTTATGTC CTATGTCTAA CCGAATCTTG
  Y
  GCTTCCATAA GGAGGGTCTT TGGTGTATGA ATCAATGATT ACAACTGATG TTAGCCTTAA
  GCTCGGATGT GGTTTTGATG GAAGCCACTG TGTCCCGTA                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss51612611	NES14661343	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C		T	C	C	T		C
ss320914163	CHEV_3_122431390	CHEVERUD	SCREENING_POP	f	SNP										C					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs36787607					SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51612611	NES14661343	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:122522121 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13771	CpG island 13771	320 bp proximal
Pde5a	phosphodiesterase 5A, cGMP-specific	701 bp upstream
Tssr31509	transcription start site region 31509	472 bp upstream
Tssr31510	transcription start site region 31510	532 bp upstream
Tssr31511	transcription start site region 31511	647 bp upstream
Tssr31512	transcription start site region 31512	691 bp upstream
Tssr31513	transcription start site region 31513	726 bp upstream
Tssr31514	transcription start site region 31514	1237 bp upstream
Tssr31515	transcription start site region 31515	1378 bp upstream
Tssr31516	transcription start site region 31516	1398 bp upstream
Tssr31517	transcription start site region 31517	1446 bp upstream
Tssr31518	transcription start site region 31518	1575 bp upstream
Tssr31519	transcription start site region 31519	1641 bp upstream
Tssr31520	transcription start site region 31520	1664 bp upstream
Tssr31521	transcription start site region 31521	1744 bp upstream
Tssr31522	transcription start site region 31522	1780 bp upstream