rs36787740 SNP Detail

Summary

• ID
  rs36787740
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:15339606 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGATAATGTG CAGGAAAAAA
  ATGCTGTTAT TAAAGAAAAT CATAAAGTGT TCATATGGTT AAAACTGGCC GGGGGAAGAA
  CATTGAAAGT TTTCTTTGAG CTGAACTTTA GAGTTTAATC AGTGAGTCAC AGATTATTAT
  ATTATTGAAG TATCTTAAAG CCTTCACATG AGAAAATCTT GATAGGCACA CTTATCTATC
  M
  AGATTTTCAT GACTACTCCT GAAAACTAAT AAGCAGATAA TATAAGGTTT TGGCACAGCC
  AAAGTTCAAC TAATTTCAAG GAGGTTTTCT CAAGTGGTGC TGGTGGCGCA GCGCAGAGGC
  GTGGGGAGGA AGAGGAGGTG GGGGGAGATG GCCGTCTGGA GCTGAGTTCA CCGGAGGGCA
  AGTGCTCCTA CTCCATGGAG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50645650	NES13623937	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36787740					SNP	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50645650	NES13623937	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:15339606 () rs orientation: forward

Symbol	Name	Function Class
Cpgi10647	CpG island 10647	107 bp proximal
Pomc-ps1	pro-opiomelanocortin, pseudogene 1	93 bp upstream