rs36788103 SNP Detail

Summary

• ID
  rs36788103
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:36348274 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    CTTGCTCTT TCTCTTCTTT CCTAGTGGCC
  TTCCGCTGCC CTCGGTGGGA AGCTGATCTG TAATGATCTA GATTGCCTCT TGGACGAGTG
  TAGCAGGCAC CGTGCTAGGG TGAGGAGAGG AGGAGAAAGG AAAAGTGAGG TCCGGAAGTT
  Y
  CCTGTGTAGG GGTTTTGGCC TTCTGTTGAG TCAACCTCTG CAGCTTGTTT CAGCATAGGT
  GGGGTGGGAA AACCGGAAAT GATACATAGA GAGAGCAATT TTCATCAAAC GTATGGATGA
  AGGGTGGGGC GGTGAAGACT CAGTCCTCCC                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss51238012	NES14282184	PERLEGEN	MM_PANEL2	f	SNP	C	T	C	C	C	T	C	C	C		C	C	T	C		T
ss319688339	CHEV_1_36366038	CHEVERUD	SCREENING_POP	f	SNP										T					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs36788103					SNP	C	T	C	C	C	T	C	C	C	T	C	C	T	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51238012	NES14282184	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:36348274 () rs orientation: forward

Symbol	Name	Function Class
Arid5a	AT-rich interaction domain 5A	within coordinates
Cpgi139	CpG island 139	624 bp distal
Gm70585	predicted gene, 70585	1569 bp upstream
Rr366864	regulatory region 366864	1027 bp downstream
Rr395991	regulatory region 395991	1360 bp downstream
Rr409283	regulatory region 409283	1580 bp distal
Rr409284	regulatory region 409284	1414 bp distal
Rr409285	regulatory region 409285	within coordinates
Rr409286	regulatory region 409286	1593 bp proximal
Tssr6253	transcription start site region 6253	1458 bp downstream
Tssr6254	transcription start site region 6254	1430 bp downstream
Tssr6255	transcription start site region 6255	1414 bp downstream
Tssr6256	transcription start site region 6256	1118 bp downstream
Tssr6257	transcription start site region 6257	1044 bp downstream
Tssr6258	transcription start site region 6258	912 bp downstream
Tssr11252	transcription start site region 11252	426 bp downstream