rs3678816 SNP Detail

Summary

• ID
  rs3678816
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  107
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:32610672 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATCTC ATTGCACACG TCTCTCAGGT
  Y
  TGCTGTAGAT TTAAATCCAA ACGCA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss5054833	WI_WGS_9_32832417	WI	MOUSE	f	SNP	T			C
ss136249727	ENSMUSSNP393639	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T		C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs3678816					SNP	T	T	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:32610672 () rs orientation: forward

Symbol	Name	Function Class
Ets1	E26 avian leukemia oncogene 1, 5' domain	within coordinates
Rr206170	regulatory region 206170	1071 bp distal
Tssr84278	transcription start site region 84278	1437 bp downstream
Tssr84279	transcription start site region 84279	1102 bp downstream
Tssr84280	transcription start site region 84280	34 bp upstream
Tssr84281	transcription start site region 84281	435 bp upstream
Tssr84282	transcription start site region 84282	514 bp upstream
Tssr84283	transcription start site region 84283	894 bp upstream
Tssr84284	transcription start site region 84284	1916 bp upstream
Tssr88691	transcription start site region 88691	1811 bp downstream