rs36788924 SNP Detail

Summary

• ID
  rs36788924
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr9:55172211 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTGAATTTA TTATCAATTT
  TTTAAAATGA CAATAGCTTC TGGGACCCCA TTAAAGCAAT GGCAGGAGAT GGTTGCTAAA
  GAACAAACAT AATCAGAGGA AACTGCGTCC TGAGACTTCT GCTCATTACT CTGCCAGACG
  CTGGTTATAT CTCTGGACAA ACACACCCTT AGCTATCTGT GTTCTGTTTG CTGCAGTAGA
  Y
  ATTGACACTG AGTAAGGTTC ATGATATACT GCAAGATCCA AGGAACCAAC CAGTGACGTC
  ACTTTTAATC TGAATAAACA AATCTGTTGG CATGTGTGTT AACTTCTGGG ACAGAGACAA
  TGGAGAGTCT GTCTACATAT GGGAACAAAC AGAGCCTGTT GAAGAGACTA GAGATATGAC
  TTTCCCACCT CTGCCTCCCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52018579	NES15035366	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36788924					SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52018579	NES15035366	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:55172211 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Nrg4	neuregulin 4			Intron
				Noncoding-Transcript-Variant
Rr679275	regulatory region 679275			within coordinates