rs36789757 SNP Detail

Summary

• ID
  rs36789757
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:40989039 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTTCATACA CATAGTATTG
  ACTGAGTGGA GCTCTTTGCA GCGTTGAGAG TTTAAATAAA AAAATGTACA GTTCTTGGGC
  ACAACTGAGG GTGCATCATA TATGTGAGTG GAATGGCCAT CCAGCCTGAT GGGTTGCCAG
  CAGAGAGGAA GGCTGGCATC TTCCATCATG GCTCATCTAT CACCAGCATT CTGGTGCATA
  Y
  ACTTTGTTGT CAAGACACTA GCCTTTATTA GTAAGCACAT TAAATACAGA GCCTGAAACT
  TCAGGCCAAG ACTGATATAT ACCAGAAATT CAGGGGAACT TTTTTTGGAT ACTGAGATCG
  CACCAATTAA ATTAAAATGA TGTGGTCTGG GCCACATGAG TAGTGAGACA CTGCCTCCAC
  CTCCAGTCCC CCCTCCCCCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50702359	NES14262543	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36789757					SNP	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50702359	NES14262543	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:40989039 () rs orientation: forward

Symbol	Name	Function Class
D9Dcr138	DNA Segment, Chr 9, Derry C. Roopenian 138	1031 bp distal
Rr206246	regulatory region 206246	1561 bp proximal
Ubash3b	ubiquitin associated and SH3 domain containing, B	within coordinates