rs36789963 SNP Detail

Summary

• ID
  rs36789963
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:66210419 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATTAACTGC CCCGCCTGGT
  CTGTGTGCAG GAGTGGATCC AGCAATCCTC ATAGCTGTGA ATTTCTGTCA TATCGGCAGA
  ATTCAGCAAC AAATTGCAGC AATTTGAGTC TGACCTCTGA TCCGCAAGGT TCATGTGAAC
  CTTTGAACCT CAGCTTGGAG TTGAGAAACA TCGAGATGGT GGTTAGTAAT TATTCTCCCA
  R
  GCCAGGTAAA TAGTTAACAC CGTGGCCGTT GCTCCGCCCG AAAGCACAAT CCGCAGATCG
  AGAGACCAGT CATTGAAGGT GCCATTGAGA GCGAGCTTCA GGAAGAAAAA AAGACAGTTT
  GGACACATCT AGTAAAAGCA GGATATTTCA GGATGAAAAC TAAGAAGAGG GCAAGGGTGC
  CGGAAAGAAG GCTTAGTCAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51731021	NES14743153	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36789963					SNP	G	G	G	G	G	G	G	G	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51731021	NES14743153	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:66210419 () rs orientation: forward

Symbol	Name	Function Class
Rbm47	RNA binding motif protein 47	within coordinates
Rr125273	regulatory region 125273	618 bp distal
Rr125274	regulatory region 125274	within coordinates
Tssr46522	transcription start site region 46522	49 bp upstream
Tssr46523	transcription start site region 46523	62 bp upstream
Tssr51169	transcription start site region 51169	301 bp upstream
Tssr51170	transcription start site region 51170	1423 bp downstream