rs36791006 SNP Detail

Summary

• ID
  rs36791006
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:135287018 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATAGCTGTCC CATTCTGCCT
  GGTAACACGT GCCGGCCACC GGGGCTCCCA GGTGATACTT CTTGCGGAAG GCTGCAGTTT
  TGAACTTCCC ACGATGGTCT CCAGACCGGT TGGTGAGGAT GGGTTCGTCA CATCTCAGTG
  GCTTGTCCTG CTGGTACACC AGCCAGACAT AGCGATGGAG GCCAGTGCCC TTGGGAGGTC
  Y
  GGAACCCACG TAATCCGAGA GGACGTTCCC ACTGCTGATG TCATTGCCTT TCATGTTGAC
  CACCAGAAAA TGGTGCCATT CCCTGTACAC GGGTTTCTTC CTACTGGGAG CATCCGGGTC
  TGTGAGGATC AAGGTGTAGA GTTTCCCTGT GTCAAGGCCA TCCCATGAAA TGCTTCCGGG
  TCTGTGCTTA ACCTGGGTGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	NOD/ShiLtJ	NZW/LacJ
ss51444381	NES14008582	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	T	C	C	C
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	NOD/ShiLtJ	NZW/LacJ
rs36791006					SNP	C	C	C	C	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51444381	NES14008582	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:135287018 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18093	CpG island 18093	within coordinates
Gm36640	predicted gene, 36640	within coordinates
Gm44274	predicted gene, 44274	1436 bp downstream
Pbp2	phosphatidylethanolamine binding protein 2	within coordinates
Tssr63760	transcription start site region 63760	329 bp downstream
Tssr63761	transcription start site region 63761	354 bp downstream