rs36791285 SNP Detail

Summary

• ID
  rs36791285
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:129005735 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGTAGCTGG ATGTATGAGC
  CTCAGTTAAT TCAGGCCTGC CACACGGGCT GGTGTTCTGC TGAGCAGGTG CATGTGTGTG
  TGTGTTGTGT AGAACAGGGT GAGGCAGAAT AAAGGTTAAA ACTCAGAATG CTGACCTAAA
  GCTTAGAAAG AAATGTCTAA ATGTCTAAAA AATCTAAATT CTTAAAGTGG AACGGTAGTA
  K
  TGTGAAAAGA CTGAAAACAA TTCTCATTTG TTTCTTTGAA AGGTCTTGGG TGTCTTTAAG
  ATGAGAGGGA TTGATTGTTG GTAGTGTTGG GGGTAAGGGA AAAGAGAGAC AGATGTTATA
  TCTGTAGTCA GCTTCATGTG CTTAGTGCCT GGCTAAGTTC CCCAGTCTTG TGAGCAAGAG
  CTAGGAAGGA GTTTGCTGAA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51624881	NES14657986	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	G	T	T	T	T	T	T	G	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36791285					SNP	T	T	T	T	T	T	G	T	T	T	T	T	T	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51624881	NES14657986	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:129005735 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13808	CpG island 13808	1451 bp proximal
Gm27195	predicted gene 27195	291 bp downstream
Pitx2	paired-like homeodomain transcription factor 2	Intron
Rr584969	regulatory region 584969	1767 bp distal
Rr584970	regulatory region 584970	76 bp proximal
Rr584971	regulatory region 584971	1396 bp proximal
Tssr31631	transcription start site region 31631	1834 bp upstream
Tssr31632	transcription start site region 31632	1864 bp upstream