rs36791294 SNP Detail

Summary

• ID
  rs36791294
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:75311462 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGCCTGTTCG CAGACCTTAC CATCCTGTTC ATTATCTACA
  AACATTACGG TATCCTGCTA GCATTCCGAA CAAGGGGCTG TTCATACATT TCGCCTTCAA
  Y
  GGTTTCCTGA AGGAACATGT GGAAGTAATA GTGAGCAGGG CAGTCACCCG AGCTGAAGAT
  ACACCAGAGG CGGGCGTGCA GAAGGGCGGA GGAGAATTG                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss51163944	NES13839631	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	T	C	T	T	C	T	C	C	C	T
ss148685092	ENSMUSSNP7182632	ENSEMBL	ENSEMBL_Sanger	f	SNP		C					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs36791294					SNP	C	C	C	T	C	T	T	C	T	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51163944	NES13839631	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:75311462 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15980	CpG island 15980	1935 bp distal
Cpgi15981	CpG island 15981	420 bp proximal
Cpgi15982	CpG island 15982	2000 bp proximal
Pdgfra	platelet derived growth factor receptor, alpha polypeptide	1491 bp upstream
Rr125352	regulatory region 125352	within coordinates
Tssr46684	transcription start site region 46684	579 bp upstream
Tssr46685	transcription start site region 46685	1358 bp upstream
Tssr46686	transcription start site region 46686	1473 bp upstream
Tssr46687	transcription start site region 46687	1515 bp upstream